Index

A

add() (samecode.survival.plot.PlotSurvival method) (samecode.survival.plot.PrettyPlotSurvival method)

add_note() (samecode.logger.Logger method) (samecode.logger.mlflow.Logger method) attention_plot() (in module samecode.plot.transformer)

B

binx() (in module samecode.preprocess)

bipartite_graph() (in module samecode.plot.network)

C

clear_plot() (in module samecode.plot.pyplot) close() (samecode.logger.Logger method) (samecode.logger.mlflow.Logger method)

compare() (samecode.survival.plot.KMPlot method) compute_char_positions_ascii() (in module samecode.survival.plot) cox_functions() (in module samecode.survival.plot)

D

dibarplot() (in module samecode.plot.pyplot)

dummy() (samecode.logger.Logger method)

E

extract_kmstats() (in module samecode.survival)

F

fit() (samecode.survival.plot.KMPlot method)

fix_string() (in module samecode.survival.plot) forestplot() (in module samecode.survival.plot)

G

get_end_position() (in module samecode.survival.plot)

get_metric() (samecode.logger.mlflow.Logger method) get_quantile_vector() (in module samecode.dataframe.series)

H

hazard() (samecode.survival.plot.PlotSurvival method) (samecode.survival.plot.PrettyPlotSurvival method)

I

init() (samecode.logger.Logger method) (samecode.logger.mlflow.Logger method)

is_binary() (in module samecode.preprocess.datatypes) is_unique() (in module samecode.preprocess.datatypes)

K

kmf_survival_functions() (in module samecode.survival.plot)

KMPlot (class in samecode.survival.plot)

L

load_oak_dataset() (in module samecode.datasets) load_selected_columns() (in module samecode.dataframe.io) load_selected_columns_unique_entries() (in module samecode.dataframe.io)

Logger (class in samecode.logger) (class in samecode.logger.mlflow) logger() (in module samecode.logger.logger)

M

make_dataset() (in module samecode.cbio.process) median_aggregation() (in module samecode.signatures) median_plot_survival() (in module samecode.survival.plot) module samecode samecode.cbio samecode.cbio.process samecode.dataframe samecode.dataframe.io samecode.dataframe.series samecode.datasets samecode.fonts samecode.logger samecode.logger.logger samecode.logger.mlflow samecode.plot samecode.plot.network samecode.plot.props samecode.plot.pyplot samecode.plot.transformer samecode.preprocess samecode.preprocess.datatypes samecode.random, [1] samecode.signatures samecode.survival samecode.survival.plot

mutation_plot() (in module samecode.plot.pyplot)

N

nan_counts() (in module samecode.preprocess.datatypes)

nan_zero_counts() (in module samecode.preprocess.datatypes)

P

plot() (samecode.survival.plot.KMPlot method) (samecode.survival.plot.PlotSurvival method) (samecode.survival.plot.PrettyPlotSurvival method)

plot_arrows() (in module samecode.plot) PlotSurvival (class in samecode.survival.plot) PrettyPlotSurvival (class in samecode.survival.plot)

R

regplot_stats() (in module samecode.plot.pyplot)

S

samecode module samecode.cbio module samecode.cbio.process module samecode.dataframe module samecode.dataframe.io module samecode.dataframe.series module samecode.datasets module samecode.fonts module samecode.logger module samecode.logger.logger module samecode.logger.mlflow module samecode.plot module samecode.plot.network module

samecode.plot.props module samecode.plot.pyplot module samecode.plot.transformer module samecode.preprocess module samecode.preprocess.datatypes module samecode.random module, [1] samecode.signatures module samecode.survival module samecode.survival.plot module save() (samecode.logger.Logger method) (samecode.logger.mlflow.Logger method) set_font() (in module samecode.fonts) set_seed() (in module samecode.random), [1] set_template() (in module samecode.survival.plot) simple_survival_plot() (in module samecode.survival.plot) skdeplot() (in module samecode.plot.pyplot) split_vector() (in module samecode.preprocess) subplots() (in module samecode.plot.pyplot)

T

table() (samecode.survival.plot.PlotSurvival method) (samecode.survival.plot.PrettyPlotSurvival method)

U

update() (samecode.logger.Logger method) (samecode.logger.mlflow.Logger method)

V

variable_change_interval() (in module samecode.plot.pyplot) variable_change_percentil() (in module samecode.plot.pyplot) variable_change_percentil_summary() (in module samecode.plot.pyplot)

variable_survival_change() (in module samecode.plot.pyplot) variable_survival_change_2_metrics() (in module samecode.plot.pyplot) volcano_plot() (in module samecode.plot)

W

whattype() (in module samecode.preprocess.datatypes)